Colophon

This document is set in EB Garamond, Source Code Pro and Lato. The body text is set at 11pt with \(\familydefault\).

It was written in R Markdown and \(\LaTeX\), and rendered into PDF using gauchodown and bookdown.

This document was typeset using the XeTeX typesetting system, and the University of California, Santa Barbara Thesis Class

Under the hood, the UCSB dissertation template is used to ensure that documents conform precisely to submission standards. Other elements of the document formatting source code have been taken from the Latex, Knitr, and RMarkdown templates for UC Berkeley’s graduate thesis, and Dissertate: a LaTeX dissertation template to support the production and typesetting of a PhD dissertation at Harvard, Princeton, and NYU

A digital version of this dissertation can be found at https://github.com/xx/xx. A hard copy of the thesis can be found in the University of California Santa Barbara library.

This version of the thesis was generated on 2018-08-18 18:32:09. The repository is currently at this commit:

Commit:  d8f4ba3553bc815764c4ec8edfa568096d3dd4a1
Merge:   6869cb2229e629ce8907b5a80296a3f660b8dc35
         092a480a8527a73973b269178e33ac9498bf6396
Author:  DanOvando <dovando@bren.ucsb.edu>
When:    2018-08-18 18:13:26

     Merge branch 'master' of https://github.com/DanOvando/dissertation
     

Commit message:  6869cb2229e629ce8907b5a80296a3f660b8dc35 
     testing push of actual chapter
     
 
Commit message:  092a480a8527a73973b269178e33ac9498bf6396 
     Create README.md
 

The computational environment that was used to generate this version is as follows:

 setting  value                       
 version  R version 3.5.1 (2018-07-02)
 system   x86_64, darwin15.6.0        
 ui       X11                         
 language (EN)                        
 collate  en_US.UTF-8                 
 tz       America/Los_Angeles         
 date     2018-08-18                  

 package        * version      date      
 abind            1.4-5        2016-07-21
 arrayhelpers     1.0-20160527 2016-05-28
 assertthat       0.2.0        2017-04-11
 backports        1.1.2        2017-12-13
 base           * 3.5.1        2018-07-05
 base64enc        0.1-3        2015-07-28
 bayesplot      * 1.6.0        2018-08-02
 bindr            0.1.1        2018-03-13
 bindrcpp       * 0.2.2        2018-03-29
 bookdown         0.7          2018-02-18
 bridgesampling   0.4-0        2017-12-19
 brms           * 2.4.0        2018-07-20
 Brobdingnag      1.2-6        2018-08-13
 broom          * 0.5.0        2018-07-17
 caret          * 6.0-80       2018-05-26
 cellranger       1.1.0        2016-07-27
 class            7.3-14       2015-08-30
 classInt         0.2-3        2018-04-16
 cli              1.0.0        2017-11-05
 coda             0.19-1       2016-12-08
 codetools        0.2-15       2016-10-05
 colorspace       1.3-2        2016-12-14
 colourpicker     1.0          2017-09-27
 compiler         3.5.1        2018-07-05
 corrr            0.3.0        2018-07-31
 crayon           1.3.4        2017-09-16
 crosstalk        1.0.0        2016-12-21
 curl             3.2          2018-03-28
 CVST             0.2-2        2018-05-26
 data.table       1.11.4       2018-05-27
 datasets       * 3.5.1        2018-07-05
 DBI              1.0.0        2018-05-02
 ddalpha          1.3.4        2018-06-23
 DEoptimR         1.0-8        2016-11-19
 devtools         1.13.6       2018-06-27
 digest           0.6.15       2018-01-28
 dimRed           0.1.0        2017-05-04
 dplyr          * 0.7.6        2018-06-29
 DRR              0.0.3        2018-01-06
 DT               0.4          2018-01-30
 dygraphs         1.1.1.6      2018-07-11
 e1071            1.7-0        2018-07-28
 evaluate         0.11         2018-07-17
 extrafont      * 0.17         2014-12-08
 extrafontdb      1.0          2012-06-11
 forcats        * 0.3.0        2018-02-19
 foreach          1.4.4        2017-12-12
 foreign          0.8-71       2018-07-20
 gauchodown     * 0.0.5        2018-08-13
 geojson          0.2.0        2017-11-08
 geojsonio        0.6.0        2018-03-30
 geojsonlint      0.2.0        2016-11-03
 geometry         0.3-6        2015-09-09
 geosphere        1.5-7        2017-11-05
 ggmap          * 2.6.1        2016-01-23
 ggplot2        * 3.0.0.9000   2018-08-15
 ggrepel          0.8.0        2018-05-09
 ggridges       * 0.5.0        2018-04-05
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 git2r          * 0.23.0       2018-07-17
 glue             1.3.0        2018-07-17
 gower            0.1.2        2017-02-23
 graphics       * 3.5.1        2018-07-05
 grDevices      * 3.5.1        2018-07-05
 grid             3.5.1        2018-07-05
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 gtable           0.2.0        2016-02-26
 gtools           3.8.1        2018-06-26
 haven            1.1.2        2018-06-27
 here             0.1          2017-05-28
 highr            0.7          2018-06-09
 hms              0.4.2        2018-03-10
 hrbrthemes     * 0.5.0        2018-07-30
 htmltools        0.3.6        2017-04-28
 htmlwidgets      1.2          2018-04-19
 httpuv           1.4.5        2018-07-19
 httr             1.3.1        2017-08-20
 igraph           1.2.2        2018-07-27
 inline           0.3.15       2018-05-18
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 jpeg             0.1-8        2014-01-23
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 jsonvalidate     1.0.0        2016-06-13
 kableExtra     * 0.9.0        2018-05-21
 kernlab          0.9-27       2018-08-10
 knitr          * 1.20         2018-02-20
 labeling         0.3          2014-08-23
 LaplacesDemon    16.1.1       2018-06-30
 later            0.7.3        2018-06-08
 lattice        * 0.20-35      2017-03-25
 lava             1.6.3        2018-08-10
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 loo              2.0.0        2018-04-11
 lubridate        1.7.4        2018-04-11
 magic            1.5-8        2018-01-26
 magrittr         1.5          2014-11-22
 mapproj          1.2.6        2018-03-29
 maps             3.3.0        2018-04-03
 maptools         0.9-3        2018-07-31
 markdown         0.8          2017-04-20
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 Matrix           1.2-14       2018-04-13
 matrixStats      0.54.0       2018-07-23
 memoise          1.1.0        2017-04-21
 methods        * 3.5.1        2018-07-05
 mime             0.5          2016-07-07
 miniUI           0.1.1.1      2018-05-18
 minqa            1.2.4        2014-10-09
 MLmetrics        1.1.1        2016-05-13
 ModelMetrics     1.2.0        2018-08-10
 modelr           0.1.2        2018-05-11
 munsell          0.5.0        2018-06-12
 mvtnorm          1.0-8        2018-05-31
 nlme             3.1-137      2018-04-07
 nloptr           1.0.4        2017-08-22
 nnet             7.3-12       2016-02-02
 parallel         3.5.1        2018-07-05
 patchwork      * 0.0.1        2018-07-30
 pillar           1.3.0        2018-07-14
 pkgconfig        2.0.1        2017-03-21
 pls              2.6-0        2016-12-18
 plyr             1.8.4        2016-06-08
 png              0.1-7        2013-12-03
 pROC             1.12.1       2018-05-06
 prodlim          2018.04.18   2018-04-18
 promises         1.0.1        2018-04-13
 proto            1.0.0        2016-10-29
 purrr          * 0.2.5        2018-05-29
 R6               2.2.2        2017-06-17
 Rcpp           * 0.12.18      2018-07-23
 RcppRoll         0.3.0        2018-06-05
 readr          * 1.1.1        2017-05-16
 readxl           1.1.0        2018-04-20
 recipes        * 0.1.3        2018-06-16
 rEDM           * 0.7.1        2018-06-20
 reshape2         1.4.3        2017-12-11
 rgdal            1.3-4        2018-08-03
 rgeos            0.3-28       2018-06-08
 RgoogleMaps      1.4.2        2018-06-08
 rjson            0.2.20       2018-06-08
 rlang            0.2.1        2018-05-30
 rmapshaper       0.4.0        2018-04-03
 rmarkdown        1.10         2018-06-11
 robustbase       0.93-2       2018-07-27
 rpart          * 4.1-13       2018-02-23
 rpart.plot       3.0.4        2018-08-13
 rprojroot        1.3-2        2018-01-03
 rsample          0.0.2        2017-11-12
 rsconnect        0.8.8        2018-03-09
 rstan          * 2.17.3       2018-01-20
 rstanarm       * 2.17.4       2018-04-13
 rstantools       1.5.0        2018-04-17
 rstudioapi       0.7          2017-09-07
 Rttf2pt1         1.3.7        2018-06-29
 rvest            0.3.2        2016-06-17
 scales         * 1.0.0        2018-08-09
 sf             * 0.6-3        2018-05-17
 sfsmisc          1.1-2        2018-03-05
 shiny            1.1.0        2018-05-17
 shinyjs          1.0          2018-01-08
 shinystan        2.5.0        2018-05-01
 shinythemes      1.1.1        2016-10-12
 sp               1.3-1        2018-06-05
 spData           0.2.9.3      2018-08-01
 splines          3.5.1        2018-07-05
 StanHeaders    * 2.17.2       2018-01-20
 stats          * 3.5.1        2018-07-05
 stats4           3.5.1        2018-07-05
 stringi          1.2.4        2018-07-20
 stringr        * 1.3.1        2018-05-10
 survival         2.42-6       2018-07-13
 svUnit           0.7-12       2014-03-02
 threejs          0.3.1        2017-08-13
 tibble         * 1.4.2        2018-01-22
 tidybayes      * 1.0.1        2018-08-02
 tidyposterior    0.0.1        2017-11-14
 tidyr          * 0.8.1        2018-05-18
 tidyselect       0.2.4        2018-02-26
 tidyverse      * 1.2.1        2017-11-14
 timeDate         3043.102     2018-02-21
 tools            3.5.1        2018-07-05
 units            0.6-0        2018-06-09
 utils          * 3.5.1        2018-07-05
 V8               1.5          2017-04-25
 viridis        * 0.5.1        2018-03-29
 viridisLite    * 0.3.0        2018-02-01
 wesanderson    * 0.3.6        2018-04-20
 withr            2.1.2        2018-03-15
 xfun             0.3          2018-07-06
 xml2             1.2.0        2018-01-24
 xtable           1.8-2        2016-02-05
 xts              0.11-0       2018-07-16
 yaml             2.2.0        2018-07-25
 yardstick        0.0.1        2017-11-12
 zoo              1.8-3        2018-07-16
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